k-fold cross-validation can significantly over-estimate true classification accuracy in common EEG-based passive BCI experimental designs: an empirical investigation

White, Jacob (2024) k-fold cross-validation can significantly over-estimate true classification accuracy in common EEG-based passive BCI experimental designs: an empirical investigation. Masters thesis, Memorial University of Newfoundland.

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Abstract

In passive brain computer interface (BCI) studies, a common approach is to collect data from mental states of interest during relatively long trials and divide these trials into shorter “epochs” to serve as individual samples in classification. While it is known that using k-fold cross-validation (CV) in this scenario can result in unreliable estimates of mental state separability (due to autocorrelation in the samples derived from the same trial), k-fold CV is still commonly used and reported in passive BCI studies. What is not known is the extent to which k-fold CV misrepresents true mental state separability. This makes it difficult to interpret the results of studies that use it. Furthermore, if the seriousness of the problem were clearly known, perhaps more researchers would be aware that they should avoid it. In this work, a novel experiment explored how the degree of correlation among samples within a class affects EEG-based mental state classification accuracy estimated by k-fold CV. Results were compared to a ground-truth (GT) accuracy and to “block-wise” CV, an alternative to k-fold which is purported to alleviate the autocorrelation issues. Factors such as the degree of true class separability and the feature set and classifier used were also explored. The results show that, under some conditions, k-fold CV inflated the GT classification accuracy by up to 25%. It is our recommendation that the number of samples derived from the same trial should be reduced whenever possible in single-subject analysis, and that both the k-fold and block-wise CV results are reported.

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